BIOF 309 – Introduction to Python

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BIOF 309 – Introduction to Python

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biof309

Course materials from my Python programming class

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BIOF 309

Introduction to Python

Chris Coletta / christopher.coletta@gmail.comMatt Shirley / @mdshw5Anatoly Dryga / anatoly.dryga@nih.govBen Busby / ben.busby@gmail.com

Handouts / Homework Assignments / Lecture slides / Screencasts / IPython Notebooks

Handouts

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Homework Assignments

The Magic Number - code Number Guessing Game - zipfile Answer the Riddle - directions, zipfile, template Nucleotide to Amino Acid Translator template, zscan4_dna.fasta, zscan4_dna_invalid_nt.fasta, autograder

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Lecture Slides

Introduction and Installation Functions March 6: Gene expression case study - slides, files March 13: Pattern Matching - slides, regexp crossword

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Screencasts

Class 2: Python Primatives, part 1 Class 2: Python Primatives, part 2

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IPython notebooks

You can right click on the notebook link and Save Link As, or just browse the HTML version.

Lesson 3: Iterables - notebook, HTML Lesson 4: Control Flow - notebook, HTML Project Ideas - notebook, HTML Class notes from Feb 27: Functions notebook, HTML Class notes from Mar 6: Files notebook, HTML Class notes from Mar 13: Regexps notebook, HTML Object Oriented Programming, Part 1 notebook, HTML Object Oriented Programming, Part 2 notebook, HTML Intro to Machine Learning w/ Scikit-learn (lecture by Parsa Hosseini) notebook Calculating Google Group email statistics notebook, HTML

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