ASaiM
A Galaxy framework to analyze gut microbiota data
Bérénice Batut — EA CIDAM, Clermont-Ferrand
November 19th, 2015
### Importance of gut microbiota
"Forgotten" organ
### Comparative meta-omic
Study of microbiota in its globality
### Comparative meta-omic of different projects
For a global view?
### Public data repository
Source of information
# ASaiM framework
Bioinformatics framework to generate workflows for analyses
of gut microbiota data
### To launch the instance
* Get the code source from [GitHub](https://github.com/ASaiM/framework)
```
$ git clone git@github.com:ASaiM/framework.git
```
* Install the required dependencies
* Launch the instance
```
$ cd framework
$ ./src/launch_galaxy.sh
```
* Browse it on [http://127.0.0.1:8080/](http://127.0.0.1:8080/)
### Behind the magic
Shell scripts to configure the instance
1. Get latest revision of Galaxy from GitHub
2. Prepare databases and local tools
3. Configure with
* Custom configuration files
* Wanted tools
* Wanted databases
4. Launch Galaxy
